Data
Coral transcriptomes
Each transcriptome includes a fasta file of contig/isotig sequences plus separate lookup tables for correspondences between contigs and isogroups (i.e., genes), isogroups correspondences with gene names, GO, KOG and KEGG terms. Also provided are protein translations and corresponding coding sequences (CDS), extracted based on blastx hits to Nematostella vectensis and Acropora digitifera proteomes.
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This transcriptome is from Moya et al. Mol Ecol 2012, 21: 2440-2454. Annotaitons by Matz.
Illumina/Trinity based trancriptome from adult corals, with Symbiodinium-specific reads excluded. This transcriptome was generated in collaboration with Jeroen van de Water, Bette Willis (James Cook University, Australia), and Madeleine van Oppen (Australian Institute of Marine Science).
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Larval 454-based trancriptome, assembled by Eli Meyer in 2012.
This transcriptome is by
Libro et al 2013, doi:10.1371/journal.pone.0081821. Annotations by Matz. |
Adult 454-based trancriptome; Symbiodinium-specific reads excluded. From Kenkel, Meyer and Matz, Mol Ecol 2013, 22: 4322-4334
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454-based trancriptome from larvae and Symbiodinium-free recruits post-metamorphosis, assembled by Eli Meyer in 2012.
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The source coral comes from the Flower Garden Banks. This assembly is based on combination of PacBio and 10x Genomics reads. The initial assembly was generated by Zach Fuller from Molly Przeworski's lab at Columbia University. See the README file included with the assembly for the assembly protocol. July 2018 versions (the redundancy-removed and the phased version) and annotations are by Yi Liao (Matz lab). The original assembly and annotations are also included (directory OLD).
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Stats (July 2018 version):
5161 sequences. average length : 86.9 kb N50 : 343 kb total length : 448 Mb |
